Session
1
|
Keynote
Address
Session Chair: Doheon Lee (KAIST, Korea)
|
|
8:50 - 9:35AM
|
Keynote : Unveiling the Ubiquitination Network Using Bioinformatics, Gwan-Su Yi (KAIST)
|
Session
2
|
Mining
Clinical Data and Text
Session Chair: Hua Xu (Vanderbilt University, US)
|
|
9:35 – 10:00AM
|
Clinical Entity Recognition using
Structural Support Vector Machines with Rich Features (Buzhou
Tang; Hongxin Cao; Yonghui
Wu; Min Jiang ; Hua Xu)
|
|
Coffee Break
10:00 – 10:30AM
|
|
|
10:30 – 10:55AM
|
Inferring Appropriate Eligibility
Criteria in Clinical Trial Protocols Without Labeled Data (Angelo Restificar ; Sophia Ananiadou)
|
|
10:55 – 11:10AM
|
Predicting Baby Feeding Method from
Unstructured Electron Health Record (Ashwani Rao; Kristin Maiden; Benjamin Carterette
; Deborah Ehrentha)
|
|
11:10 – 11:35AM
|
Extracting Structured Information
from Free-Text Medication Prescriptions Using Dependencies (Andrew MacKinlay ; Karin Verspoor)
|
|
Lunch
11:35 – 1:30PM
|
|
Session
3
|
Mining
Biological Data and Text
Session Chair: Min Song (Yonsei
University, Korea)
|
|
1:30 – 1:55PM
|
Indexing Methods for Efficient
Protein 3D Surface Search (Sungchul Kim; Sael Lee ; Hwanjo Yu)
|
|
1:55 – 2:20PM
|
Protein Complex Prediction via
Bottleneck-Based Graph Partitioning (Jaegyoon Ahn; Dae Hyun Lee; Youngmi Yoon; Yunku Yeu ; Sanghyun Park)
|
|
2:20 – 2:35PM
|
Finding associations among SNPs for
prostate cancer using collaborative filtering (Rohit
Kugaonkar; Aryya Gangopadhyay; Yelena Yesha; Anupam Joshi; Yaacov Yesha; Michael Grasso; Mary Brady ; Napthali
Rishe)
|
|
2:35 – 3:00PM
|
Detecting Type 2 Diabetes Causal SNP
Combinations from GWAS Dataset with Optimal Filtration (Chiyong
Kang; Hyeji Yu ; Gwan-Su
Yi)
|
|
Coffee Break
3:00 – 3:30PM
|
|
|
3:30 – 3:55PM
|
TNMCA: Generation and Application of
Network Motif-Based Inference Models for Drug Repositioning (Jaejoon Choi; Kwangmin Kim;
Min Song ; Doheon Lee)
|
|
3:55 – 4:20PM
|
High Precision Rule Based PPI
Extraction and Per-Pair Basis Performance (Junkyu
Lee; Seongsoon Kim; Sunwon
Lee; Kyubum Lee ; Jaewoo
Kang)
|
|
4:20 – 4:45PM
|
Rule-based whole body modeling for
analyzing multi-compound effects (Woochang Hwang;
Yongdeuk Hwang; Sunjae
Lee ; Doheon Lee)
|
|
4:45 – 5:00PM
|
Lexicon-free and context-free drug
names identification methods using Hidden Markov Models and Pointwise Mutual Information (Jacek
Malyszko ; Agata Filipowska)
|